Index

A

add() (pykappa.system.System method) advance_time_to() (pykappa.system.System method) Agent (class in pykappa.pattern) agent (pykappa.pattern.Site property) agents (pykappa.mixture.Mixture property) (pykappa.pattern.Component property) (pykappa.pattern.Pattern property)

applied (pykappa.system.RuleTally attribute) apply() (pykappa.system.System method) attempts (pykappa.system.RuleTally property)

B

bound (pykappa.pattern.Site property)

C

Component (class in pykappa.pattern) component_constraint (pykappa.rule.Rule attribute) component_tracking (pykappa.mixture.Mixture property)

components (pykappa.mixture.Mixture property) (pykappa.pattern.Pattern property) contact_map() (pykappa.system.System method)

D

dataframe (pykappa.analysis.Monitor property)

diameter (pykappa.pattern.Component property)

E

Embedding (class in pykappa.pattern) embeddings() (pykappa.mixture.Mixture method) (pykappa.pattern.Component method) embeddings_in_component() (pykappa.mixture.Mixture method)

equilibration_start() (in module pykappa.analysis) (pykappa.analysis.Monitor method) evaluate() (pykappa.expression.Expression method) Expression (class in pykappa.expression)

F

failed (pykappa.system.RuleTally attribute) from_ka() (pykappa.system.System class method) from_kappa() (pykappa.expression.Expression class method) (pykappa.mixture.Mixture class method) (pykappa.pattern.Agent class method) (pykappa.pattern.Component class method) (pykappa.pattern.Pattern class method) (pykappa.rule.Rule class method) (pykappa.system.System class method)

H

history (pykappa.analysis.Monitor attribute)

I

interface (pykappa.pattern.Agent property)

isomorphic() (pykappa.pattern.Component method) isomorphisms() (pykappa.pattern.Component method)

K

kappa_str (pykappa.expression.Expression property) (pykappa.mixture.Mixture property) (pykappa.pattern.Agent property) (pykappa.pattern.Component property) (pykappa.pattern.Pattern property) (pykappa.pattern.Site property) (pykappa.rule.Rule property) (pykappa.system.System property)

kappa_str_with_agent_ids (pykappa.mixture.Mixture property) (pykappa.pattern.Agent property) (pykappa.pattern.Component property) (pykappa.pattern.Pattern property) kd_table() (pykappa.system.System method)

L

label (pykappa.pattern.Site property) left (pykappa.rule.Rule attribute)

list_from_kappa() (pykappa.rule.Rule class method) load() (pykappa.system.System class method)

M

measure() (pykappa.analysis.Monitor method) Mixture (class in pykappa.mixture) mixture (pykappa.system.System property) module pykappa.analysis pykappa.expression pykappa.mixture pykappa.pattern pykappa.rule pykappa.system

Monitor (class in pykappa.analysis) monitor (pykappa.system.System property)

N

n_embeddings() (pykappa.rule.Rule method) n_isomorphisms() (pykappa.pattern.Pattern method) n_symmetries (pykappa.rule.Rule property)

neighborhood() (pykappa.pattern.Agent static method) neighbors (pykappa.pattern.Agent property) next_update_time (pykappa.system.System property)

O

observables (pykappa.system.System property)

P

partner (pykappa.pattern.Site property) Pattern (class in pykappa.pattern) plot (pykappa.pattern.Component property) plot() (pykappa.analysis.Monitor method) pykappa.analysis module pykappa.expression module

pykappa.mixture module pykappa.pattern module pykappa.rule module pykappa.system module

R

rate() (pykappa.rule.Rule method) rate_expression (pykappa.rule.Rule attribute) reactivity (pykappa.system.System property) reactivity() (pykappa.rule.Rule method) read_ka() (pykappa.system.System class method)

remove() (pykappa.system.System method) right (pykappa.rule.Rule attribute) Rule (class in pykappa.rule) rule_graph() (pykappa.system.System method) rules (pykappa.system.System property) RuleTally (class in pykappa.system)

S

save() (pykappa.system.System method) set_token() (pykappa.system.System method) signatures (pykappa.system.System property) Site (class in pykappa.pattern)

site_defaults (pykappa.system.System property) state (pykappa.pattern.Site property) System (class in pykappa.system) system (pykappa.analysis.Monitor property)

T

tallies (pykappa.system.System property) tallies_table (pykappa.system.System property) tally_totals (pykappa.system.System property)

time (pykappa.system.System property) token_updates (pykappa.rule.Rule attribute) tokens (pykappa.system.System property) type (pykappa.pattern.Agent property)

U

update() (pykappa.analysis.Monitor method) (pykappa.system.System method)

update_component_weights() (pykappa.rule.Rule method) update_via_kasim() (pykappa.system.System method)

V

variables (pykappa.system.System property)

W

write_ka() (pykappa.system.System method)